PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_40146.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 88aa    MW: 10075.5 Da    PI: 9.9906
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_40146.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.71.2e-076382222
                      AP2  2 gykGVrwdkkrgrWvAeIrdp 22
                              y+G+r ++ +g+W++eIrdp
  Rsa1.0_40146.1_g00001.1 63 VYRGIRKRP-WGKWASEIRDP 82
                             69*******.**********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.9576388IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-56387IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-106388IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
LDASACDDFW GFDSTFKLLP TKQQGVITAI LNLKTLEVTL KEEAADKEKE PAATEKRKER  60
KNVYRGIRKR PWGKWASEIR DPEKGARV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15670RKERKNVYRGIRKRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893171e-88AC189317.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036B21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013650664.16e-39PREDICTED: ethylene-responsive transcription factor RAP2-3-like
RefseqXP_013651600.15e-39PREDICTED: ethylene-responsive transcription factor RAP2-3-like
SwissprotP427361e-26RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A078CZS93e-40A0A078CZS9_BRANA; BnaA03g34290D protein
STRINGBra001640.1-P4e-38(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-23ethylene-responsive element binding protein